SNP Profiles of EQX 69 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
1._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
2._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
3._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
4._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
5._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
6._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
7._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
8._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
9._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
10._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
11._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
12._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
13._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
14._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
15._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
16._EQX_69_[EQX]	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
17._GC-01-008-1-08	CT	AA	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
18._RUQ_100	__	AA	CG	TT	__	__	__	TT	__	__	__	__	CT	AG
19._RUQ_100	__	__	CG	__	__	__	__	TT	__	CT	__	GG	__	AG
20._RUQ_100B	__	__	CG	__	__	__	__	TT	__	CT	__	GG	__	AG
21._RUQ_100	CT	AG	CG	TT	TT	CC	TT	TT	CT	CT	AA	GG	CT	AG
22._GC-01-8-1-8	AG	AA	CG	AA	AA	CC	AA	AA	__	__	AA	GG	AG	AG
23._RUQ_100	AG	AA	CG	AA	AA	CC	AA	AA	__	__	AA	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
1._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
2._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
3._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
4._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
5._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
6._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
7._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
8._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
9._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
10._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
11._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
12._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
13._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
14._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
15._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
16._EQX_69_[EQX]	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
17._GC-01-008-1-08	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	TT	CC
18._RUQ_100	__	__	__	__	CC	CG	GG	__	CT	CC	CG	GT	__	CC
19._RUQ_100	__	__	__	__	__	CG	GG	AA	__	CC	CG	__	__	CC
20._RUQ_100B	__	__	__	__	__	CG	GG	AA	__	CC	CG	__	__	CC
21._RUQ_100	TT	AT	GG	CT	CC	CG	GG	AA	CT	CC	CG	GT	CT	CC
22._GC-01-8-1-8	AA	AT	GG	AG	GG	CG	CC	__	AG	CC	CG	AC	__	CC
23._RUQ_100	AA	AT	GG	AG	GG	CG	CC	__	AG	CC	CG	AC	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
1._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
2._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
3._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
4._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
5._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
6._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
7._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
8._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
9._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
10._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
11._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
12._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
13._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
14._GC-01-008-1-08	__	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
15._EQX_69_[EQX]	__	GG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
16._EQX_69_[EQX]	AG	GG	AA	CT	AA	CC	__	CT	GG	__	AT	GG	X_X	X_X
17._GC-01-008-1-08	AG	GG	AA	CT	AA	CC	__	CT	GG	__	AT	GG	X_X	X_X
18._RUQ_100	AG	__	AA	CT	AA	CC	AA	CT	GG	CC	__	__	X_X	X_X
19._RUQ_100	__	__	__	__	AA	__	__	__	__	CC	__	__	X_X	X_X
20._RUQ_100B	__	__	__	__	AA	__	__	__	__	CC	__	__	X_X	X_X
21._RUQ_100	AG	AG	AA	CT	AA	CC	AA	CT	GG	CC	AT	GG	X_X	X_X
22._GC-01-8-1-8	__	GG	AA	AG	AA	GG	AA	AG	CC	CC	AT	GG	X_X	X_X
23._RUQ_100	__	GG	AA	AG	AA	GG	AA	AG	CC	CC	AT	GG	X_X	X_X

Input profile: EQX_69_[EQX]

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Mars Center for Cocoa Science, Brazil

Location: 1106 10 > F

Dapeng Zhang, 2016

1._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

2._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

3._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

4._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

5._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._EQX_69_[EQX] GC-01-008-1-08

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 1

Dapeng Zhang, 2016

9._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 2

Dapeng Zhang, 2016

10._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 3

Dapeng Zhang, 2016

11._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 12

Dapeng Zhang, 2016

12._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 14 > F

Dapeng Zhang, 2016

13._EQX_69_[EQX]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 7 > FP

Dapeng Zhang, 2016

14._EQX_69_[EQX] GC-01-008-1-08

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

15._EQX_69_[EQX]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 16

Dapeng Zhang, 2016

16._EQX_69_[EQX]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1106 9 > FP

Dapeng Zhang, 2016

17._EQX_69_[EQX] GC-01-008-1-08

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP1

18._EQX_69_[EQX] RUQ_100

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._EQX_69_[EQX] RUQ_100

identical
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.297 Cri
0.093 IMC
0.468 Sca
0.116

20._EQX_69_[EQX] RUQ_100B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

21._EQX_69_[EQX] RUQ_100

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

22._EQX_69_[EQX] GC-01-8-1-8

54.3 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 1, Rep: 6, Tree: 10 > FP2

Notes: Brazil_Selections_Poss_grandparent

23._EQX_69_[EQX] RUQ_100

54.3 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25